Microbiome Friendly

Topics

Gut

Why her and not you? — a man waits on the bench of a launderette in flat late-morning light
Probiotic responders

Same capsule, opposite result: what makes a probiotic work

120 overweight adults, 12 weeks: heat-killed L. plantarum did nothing on average. Only the least varied guts lost weight. Why that is a lead, not proof.

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Is the pain really physical? — a woman stops in an office corridor, a forearm pressed across her middle
Irritable bowel

IBS pain is not in your head: enzymes poke the gut's nerves

Stool fluid from IBS patients made gut nerve networks fire far harder than fluid from healthy people, a 2026 Gut study found. What it shows — and does not.

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Where did our antibiotics begin? — a man in his seventies presses damp soil around a seedling in his garden
Actinomycetota

Actinomycetota: the phylum that guards infants and causes TB

Actinomycetota, formerly Actinobacteria: the phylum of Bifidobacterium and of tuberculosis. Where it lives in your body, what it does for and against you.

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Do gut bacteria make you fat? — a woman in her fifties stands beside the bathroom scale at dusk, unimpressed
Bacillota

Bacillota (once Firmicutes): the 'fat bacteria' that aren't

Bacillota (once Firmicutes) feeds your gut butyrate and houses C. difficile. What the studies show, and why the 'fat ratio' on a stool test can't diagnose you.

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What happens without fibre? — a woman in her forties sets a paper bag of greens on a market table at noon
Bacteroidota

Bacteroidota: starve it of fibre and it eats your gut lining

Bacteroidota, formerly Bacteroidetes: what this huge gut bacterial group digests for you, when it turns dangerous, and what the named studies found.

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Is every bifidobacterium good? — a woman in her late twenties sits with a mug on the sofa in lamp light
Bifidobacterium

Bifidobacterium is not automatically a good bacterium

Bifidobacterium rules the gut of a breastfed baby. What it does for us, what it does against us, and exactly where the evidence stops.

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Does carrying it mean illness? — a woman in her seventies rests on a staircase landing with her shopping bag
Clostridioides difficile

Carrying C. difficile can lower your risk of C. difficile

Clostridioides difficile, formerly Clostridium difficile: what it is, where it lives, why it harms — and why silent carriage goes with less diarrhoea.

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Is E. coli always dangerous? — a woman in her thirties pauses her fork over a bowl of salad at a canteen table
Escherichia coli

E. coli is your gut resident, not just a food poisoning bug

Escherichia coli lives in the gut of more than 90 % of people. What it does for us, what it does against us, and where the honest evidence stops.

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Is something this common a pathogen? — a woman pauses in her hallway after lunch, a hand flat below her ribs
Helicobacter pylori

Helicobacter pylori: carcinogen, yet linked to less asthma

Half the world hosts it. It causes ulcers and gastric cancer, yet goes with less asthma and less oesophageal (gullet) cancer. Proven harm, unproven benefit.

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Does yogurt live in your gut? — a man eats plain yogurt at his kitchen counter in the first light
Lactobacillus

Lactobacillus: the yogurt bug that barely lives in your gut

What Lactobacillus is, where it actually lives in the body, what the trials show it can and cannot do, and why the genus was split into 25 genera in 2020.

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Are these the bad bacteria? — a woman kneels at the bean rows of an allotment in the late afternoon sun
Pseudomonadota

Pseudomonadota: the 'bad' bacteria a healthy gut carries

Pseudomonadota, formerly Proteobacteria: what this bacterial phylum does for us, what it does against us, and why a healthy gut keeps its share low.

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Can I rebuild my gut? — a woman at her kitchen table late in the evening, the course finished
Ask Magnus

Yes, but not all of it: your gut after antibiotics

Twelve healthy men, three last-resort antibiotics, six months of samples: the community came back near baseline in 1.5 months. Nine species did not.

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With food or empty stomach? — a man over his lunch at a canteen table in the middle of the day
Ask Magnus

Do probiotics survive acid? That's the wrong question

Stomach acid does kill most swallowed bacteria, and spores and coatings change the odds — but a probiotic that survives the trip may still never settle in you.

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It helped her. Why not me? — a woman at a café table in the afternoon, a second cup opposite her
Ask Magnus

Why the probiotic worked for your friend, not you

Three things differ between you and your friend: the strain (the exact named variety, not the species), the dose and duration, and the gut you started with.

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Is a bigger number better? — a man empty-handed in the produce aisle late in the morning
Myth check

More CFU is better? Not when 100× changed nothing

A bigger CFU count — more live bacteria per dose — sells probiotics. Trials disagree: doubling once helped, a hundredfold jump changed nothing.

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Can three days reset it? — a woman at her sitting-room window in late light, arms folded
Myth check

Three days will change your gut. Then it changes back

A three-day gut reset is sold everywhere. The measurements say your gut bacteria shift in one day, revert in two, and keep 60 % of their strains for years.

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What should I eat now? — a woman at a market stall mid-morning, a paper bag of vegetables in hand
After antibiotics

Nine species still missing: what to eat after antibiotics

Your gut is near baseline 1.5 months after a course, but nine species were undetectable in most men at 180 days. What the food and probiotic trials show.

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Do fermented foods really work? — a man eats a bowl of kefir at a small table on his balcony in the afternoon
Fermented foods

Fermented foods: the microbes you eat aren't the point

Stanford put 36 adults through a 17-week trial, half on six servings a day: gut diversity rose and 19 inflammatory proteins fell — not from the microbes.

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How much fibre is enough? — a woman at her dining table early in the morning, a bowl of porridge in front of her
Food & routine

Not all fibre feeds your bacteria, and more isn't better

Fermentable fibre feeds your gut bacteria; viscous and coarse fibre do other jobs. How much the trials measured, and how to add it without bloating.

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Mouth

Does sugar cause mouth cancer? — a woman on her balcony late at night, chewing, a glass of wine in her hand
Oral acetaldehyde

The carcinogen your own mouth makes out of ordinary sugar

Mouth microbes from cancer patients turned sugar and alcohol into acetaldehyde — a carcinogen ranked with tobacco. Plaque hid the rest until enzymes opened it.

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What actually causes bad breath? — a woman at her own front door breathes into a cupped hand
Volatile sulfur compounds

Bad breath isn’t dirt. It’s one bacterial gene doing its job

A 2026 lab-dish and rat study turned down the bacterial gene behind bad breath. Here is the mechanism, the numbers, and everything the study did not show.

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Do probiotic spores stay? — a woman in her thirties waits at a bus stop with her bag in cold daylight
Bacillus coagulans

Bacillus coagulans: a spore passing through, not a resident

Bacillus coagulans (also Heyndrickxia coagulans — one bug, two names): what this spore-forming probiotic does for mouth and gut, and where the evidence stops.

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Should this live in my mouth? — a woman drying her hands at a bathroom basin late at night
Fusobacteriota

Why the 'colon cancer bacterium' is normal in your mouth

Fusobacteriota (formerly Fusobacteria) is a normal phylum — a whole branch — of mouth bacteria. One small clade is linked to colon cancer; most of it is not.

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Does carrying it mean disease? — a woman sits on the edge of her bed at night, a glass of water in both hands
Porphyromonas gingivalis

Porphyromonas gingivalis: gum suspect healthy mouths carry

What Porphyromonas gingivalis is, where it lives, what it does for us and against us — mechanism first, every number traced to a named study.

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Does everyone carry the cavity germ? — a young man takes a sweet from a paper bag at his desk
Streptococcus mutans

Streptococcus mutans: the cavity germ that only wins if fed

What Streptococcus mutans is, where it lives, how it turns sugar into plaque and acid, what it does for and against you — every number with a named study.

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Is the tongue's own microbe safe? — a woman sits with a cup of tea on her balcony in the morning
Streptococcus salivarius

Streptococcus salivarius: helpful microbe, rare dark side

What Streptococcus salivarius does on your tongue, what its probiotic trials actually show, and the rare infections it causes — every source named.

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Is a coated tongue bad? — a woman at her bathroom mirror at first light, looking at her own tongue
Ask Magnus

What that coating on your tongue is actually made of

A white film on the tongue is mostly your own shed cells and bacteria. What it is made of, why it smells, when it is normal, and what trials show reduces it.

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Should I rinse every day? — a woman pausing in her hallway, coat half on, just after eight
Myth check

Mouthwash kills the microbes your blood pressure needs

Is killing more mouth bacteria always better? A 2013 trial says no: seven days of antiseptic rinsing cut oral nitrite by 90 % and nudged blood pressure up.

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Is it coming from my stomach? — a woman in her parked car mid-morning, a palm flat on her stomach
Myth check

Bad breath from the stomach? One case in a hundred

A breath clinic measured 491 patients: the mouth explained 87 % of bad breath and the digestive tract only 1 %. Where the sulfur smell is really made.

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Immunity

Metabolism

Gut–brain